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Publications20112010- A calibrated diversity assay for nucleic acid libraries using DiStRO--a Diversity Standard of Random Oligonucleotides.
Tatjana Schütze, Peter F Arndt, Marcus Menger, Aniela Wochner, Martin Vingron, Volker A Erdmann, Hans Lehrach, Christian Kaps, Jörn Glökler
Nucleic Acids Research 38 (2010) e23
[Abstract] [Journal] [Fulltext]
- The evolution of transcription-associated biases of mutations across vertebrates.
Paz Polak, Robert Querfurth, Peter F Arndt
BMC Evolutionary Biology 10 (2010) 187
[Abstract] [Journal] [Fulltext]
2009- Strong evidence for lineage and sequence specificity of substitution rates and patterns in Drosophila.
Nadia D Singh, Peter F Arndt, Andrew G Clark, Charles F Aquadro
Molecular Biology and Evolution 26 (2009) 1591-1605
[Abstract] [Journal] [Fulltext]
- Methylation and deamination of CpGs generate p53-binding sites on a genomic scale.
Tomasz Zemojtel, Szymon M Kielbasa, Peter F Arndt, Ho-Ryun Chung, Martin Vingron
Trends in Genetics : TIG 25 (2009) 63-66
[Abstract] [Journal] [Fulltext]
- Long-range bidirectional strand asymmetries originate at CpG islands in the human genome.
Paz Polak, Peter F Arndt
Genome Biology and Evolution 1 (2009) 189-197
[Abstract] [Journal] [Fulltext]
2008- The impact of recombination on nucleotide substitutions in the human genome.
Laurent Duret, Peter F Arndt
PLoS Genetics 4 (2008) e1000071
[Abstract] [Journal] [Fulltext]
- Transcription induces strand-specific mutations at the 5' end of human genes.
Paz Polak, Peter F Arndt
Genome Research 18 (2008) 1216-1223
[Abstract] [Journal] [Fulltext]
- Quantifying the stationarity and time reversibility of the nucleotide substitution process.
Federico Squartini, Peter F Arndt
Molecular Biology and Evolution 25 (2008) 2525-2535
[Abstract] [Journal] [Fulltext]
- Genetic alterations of HLA-class II in ovarian cancer.
Kirsten Kübler, Peter F Arndt, Eva Wardelmann, Christina Landwehr, Dieter Krebs, Walther Kuhn, Katrin van der Ven
International Journal of Cancer 123 (2008) 1350-1356
[Abstract] [Journal] [Fulltext]
2007- The majority of recent short DNA insertions in the human genome are tandem duplications.
Philipp W Messer, Peter F Arndt
Molecular Biology and Evolution 24 (2007) 1190-1197
[Abstract] [Journal] [Fulltext]
- Reconstruction of ancestral nucleotide sequences and estimation of substitution frequencies in a star phylogeny.
Peter F Arndt
Gene 390 (2007) 75-83
[Abstract] [Journal] [Fulltext]
- Effects of long-range correlations in DNA on sequence alignment score statistics.
Philipp W Messer, Ralf Bundschuh, Martin Vingron, Peter F Arndt
Journal of Computational Biology : a Journal of Computational Molecular Cell Biology 14 (2007) 655-668
[Abstract] [Journal] [Fulltext]
- DNA indels in coding regions reveal selective constraints on protein evolution in the human lineage.
Nicole de la Chaux, Philipp W Messer, Peter F Arndt
BMC Evolutionary Biology 7 (2007) 191
[Abstract] [Journal] [Fulltext]
- The Otto Warburg International Summer School and Workshop on Networks and Regulation
Peter F Arndt, Martin Vingron
BMC Bioinformatics 8 (2007) S1
[Abstract] [Journal] [Fulltext]
2006- Alignment Statistics for Long-Range Correlated Genomic Sequences
Philipp W Messer, Ralf Bundschuh, Martin Vingron, Peter F Arndt
Lecture Notes in Computer Science 3909 (2006) 426-440
[Abstract] [Journal] [Fulltext]
- Identification of highly specific localized sequence motifs in human ribosomal protein gene promoters.
Stefan Roepcke, Degui Zhi, Martin Vingron, Peter F Arndt
Gene 365 (2006) 48-56
[Abstract] [Journal] [Fulltext]
- CorGen--measuring and generating long-range correlations for DNA sequence analysis.
Philipp W Messer, Peter F Arndt
Nucleic Acids Research 34 (2006) W692-5
[Abstract] [Journal] [Fulltext]
- Minor shift in background substitutional patterns in the Drosophila saltans and willistoni lineages is insufficient to explain GC content of coding sequences.
Nadia D Singh, Peter F Arndt, Dmitri A Petrov
BMC Biology 4 (2006) 37
[Abstract] [Journal] [Fulltext]
- A novel method distinguishes between mutation rates and fixation biases in patterns of single-nucleotide substitution.
Mikhail Lipatov, Peter F Arndt, Terence Hwa, Dmitri A Petrov
Journal of Molecular Evolution 62 (2006) 168-175
[Abstract] [Journal] [Fulltext]
- HLA-class II haplotype associations with ovarian cancer.
Kirsten Kübler, Peter F Arndt, Eva Wardelmann, Dieter Krebs, Walther Kuhn, Katrin van der Ven
International Journal of Cancer 119 (2006) 2980-2985
[Abstract] [Journal] [Fulltext]
2005- Identification and measurement of neighbor-dependent nucleotide substitution processes.
Peter F Arndt, Terence Hwa
Bioinformatics (Oxford, England) 21 (2005) 2322-2328
[Abstract] [Journal] [Fulltext]
- Solvable sequence evolution models and genomic correlations.
Philipp W Messer, Peter F Arndt, Michael Lässig
Physical Review Letters 94 (2005) 138103
[Abstract] [Fulltext]
- Universality of long-range correlations in expansion-randomization systems
Philipp W Messer, Michael Lässig, Peter F Arndt
Journal of Statistical Mechanics: Theory and Experiment 2005 (2005) P10004--P10004
[Abstract] [Journal] [Fulltext]
- Genomic heterogeneity of background substitutional patterns in Drosophila melanogaster.
Nadia D Singh, Peter F Arndt, Dmitri A Petrov
Genetics 169 (2005) 709-722
[Abstract] [Journal] [Fulltext]
- Comparative promoter region analysis powered by CORG.
Christoph Dieterich, Steffen Grossmann, Andrea Tanzer, Stefan Röpcke, Peter F Arndt, Peter F Stadler, Martin Vingron
BMC Genomics 6 (2005) 24
[Abstract] [Journal] [Fulltext]
- Male-driven biased gene conversion governs the evolution of base composition in human alu repeats.
Matthew T Webster, Nick G C Smith, Lina Hultin-Rosenberg, Peter F Arndt, Hans Ellegren
Molecular Biology and Evolution 22 (2005) 1468-1474
[Abstract] [Journal] [Fulltext]
- Substantial regional variation in substitution rates in the human genome: importance of GC content, gene density, and telomere-specific effects.
Peter F Arndt, Terence Hwa, Dmitri A Petrov
Journal of Molecular Evolution 60 (2005) 748-763
[Abstract] [Journal] [Fulltext]
2004- Regional and time-resolved mutation patterns of the human genome.
Peter F Arndt, Terence Hwa
Bioinformatics (Oxford, England) 20 (2004) 1482-1485
[Abstract] [Journal] [Fulltext]
- Identification and Measurement of Neighbor Dependent Nucleotide Substitution Processes
Peter F Arndt
Lecture Notes in Informatics P-53 (2004) 227-234
[Abstract] [Fulltext]
2003- DNA sequence evolution with neighbor-dependent mutation.
Peter F Arndt, Christopher B Burge, Terence Hwa
Journal of Computational Biology : a Journal of Computational Molecular Cell Biology 10 (2003) 313-322
[Abstract] [Journal] [Fulltext]
- Distinct changes of genomic biases in nucleotide substitution at the time of Mammalian radiation.
Peter F Arndt, Dmitri A Petrov, Terence Hwa
Molecular Biology and Evolution 20 (2003) 1887-1896
[Abstract] [Journal] [Fulltext]
- The History of Nucleotide Substitution Pattern in Human
Peter F Arndt
Biophysics 48 (2003) 585-589
[Abstract] [Fulltext]
2002- DNA Sequence Evolution with Neighbor-Dependent Mutation
Peter F Arndt, Christopher B Burge, Terence Hwa
RECOMB 2002, Proceedings of the 6th Annual International Conference on Computational Biology (2002) 32-38
[Abstract] [Fulltext]
- Spontaneous Breaking of Translational Invariance and Spatial Condensation in Stationary States on a Ring. II. The Charged System and the Two-Component Burgers Equations
Peter F Arndt, Vladimir Rittenberg
Journal of Statistical Physics 107 (2002) 989-1013
[Abstract] [Journal] [Fulltext]
2001- Criterion for crack formation in disordered materials
Peter F Arndt, Thomas Nattermann
Physical Review B 63 (2001) 134204
[Abstract] [Journal] [Fulltext]
- Directed percolation, fractal roots and the Lee-Yang theorem
Peter F Arndt, Silvio Renato Dahmen, Haye Hinrichsen
Physica A: Statistical Mechanics and its Applications 295 (2001) 128-131
[Abstract] [Journal] [Fulltext]
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